| Symbols & Numeric |
| @ FTP Nodes |
| 3D VOI Visualization |
| 3D Volume Rendering, Rotating MIP Images |
| A |
| Access to Console Output |
| Accessing PMOD R Variables |
| Adding Iso-Contour Lines to Images |
| Adding/Removing individual Pixels |
| Administrative Tools |
| Aggregate Components such as VOIs and Kinetic Parameters |
| Aggregate Export and R Transfer |
| Aggregate Generation and Saving |
| Aggregate Inspection and Combination with External Data |
| AlwaysUp Configuration |
| AlwaysUp Web Service configuration (optional) |
| Analysis Scripts for Aggregates |
| ANOVA for 3 or 4 Groups |
| Applying VOI Definitions |
| Association of MR and PET Series |
| Atlas-based VOI Statistics |
| Auto Iso-contour VOIs |
| Auto Iso-contour VOIs |
| Special-purpose Sub-VOIs |
| Automatic Brain VOIs |
| Automatic Brain VOIs (PFUS Option) |
| Average (Frames & Slices) |
| B |
| Background Removal |
| Bartlett Test |
| Basic User Interface Elements |
| Basic User Interface Elements |
| Data Selection |
| Bland Altman Plot |
| Box Plots |
| Buffer Loading |
| Buffer Saving |
| Buffer Loading |
| Buffer Saving |
| C |
| Changing the Image Orientation |
| Changing the Image Orientation |
| Format Descriptions |
| Changing the Image Presentation |
| Changing the Image Presentation |
| SUV Value Inspection and Statistics |
| Combination of License and Database Server |
| Combination of License and Database Server |
| Combination of License and Database Server |
| Combination of License and Database Server |
| Command Layout |
| Command Layout |
| Plotting Layout |
| Common Requirements |
| Component Data Loading |
| Component Data Loading |
| Loading/Saving with Database Option |
| Component Data Loading and Saving |
| Component Data Saving |
| Component Data Saving |
| Loading/Saving with Database Option |
| Configuration Backup/Restore |
| Configuring the Layout |
| Contour Definition Tools |
| Contour Display Properties |
| Contour Drawing Mode |
| Contour Interpolation |
| Contour Operations |
| Converting Atlas VOIs to Contour VOIs using Normalize |
| Converting Atlas VOIs to Contour VOIs using Outline |
| Creation and Configuration of Databases |
| Creation of a DICOMDIR File |
| Creation of Atlas VOIs |
| CTR Toolbar |
| Curve Association |
| Curve Association |
| Kinetic Modeling (PKIN Option) |
| Curve Display |
| Cynomolgus Monkey Atlas |
| D |
| Data Association |
| Data Inspector |
| Data Loading |
| Data Loading |
| R Console Organization |
| Data Loading and Saving |
| Data Plots |
| Data Selection |
| Data Loading |
| Data Selection |
| Data Structure - Master Table |
| Data Structure - Master Table |
| Data Units |
| Database Administration |
| Database Loading |
| Database Loading |
| Image History and Macros |
| Database Loading - Page 1 (Option) |
| Database Saving |
| Defining the Acquisition Timing |
| Density Plots |
| Descriptive Statistics |
| Detailed Pipeline Example: Kinetic Modeling with SRTM, Brain VOIs in PET Space |
| Detailed Pipeline Example: Kinetic Modeling with SRTM, Brain VOIs in PET Space |
| Kinetic Modeling (PKIN Option) |
| Pipeline Example: Brain Uptake Statistics, MR Space |
| Pipeline Processing |
| Replace Images |
| VOI Statistics |
| DICOM Advanced Options |
| DICOM Client Configuration |
| DICOM Part 10 Data Loading |
| Creation of a DICOMDIR File |
| DICOM Part 10 Data Loading |
| Image Data Loading |
| DICOM Part 10 Data, C-STORE |
| DICOM Query Loader (Auxiliary Server) |
| DICOM Query/Retrieve |
| DICOM Part 10 Data Loading |
| DICOM Query/Retrieve |
| Image Data Loading |
| DICOM Server Configuration |
| DICOM Query/Retrieve |
| DICOM Server Configuration |
| PMOD configuration |
| DICOM Server Properties |
| DICOM Server Starting |
| DICOM Special Cases |
| Difference |
| Directory Tree |
| Discrimination Analysis |
| E |
| Edge Enhancement |
| Editing Contour Shapes |
| Enabling Pre-Processing Operations |
| Endian Switching |
| Energy Masking |
| Environment and Prerequisites |
| Erosion/Dilation |
| Export and Backup of Database Contents |
| External Backup Procedure |
| External Script |
| External Tools |
| External Tools |
| Handy Image Processing Tools |
| Image Layout |
| Pipeline Processing |
| Use of External Tools for Pipeline Processing |
| F |
| File-based loading |
| File-based Saving |
| File-Based Statistics |
| Filter |
| Filter |
| Handy Image Processing Tools |
| Format Descriptions |
| Format Overview |
| G |
| General Configuration |
| General Configuration |
| Inclusion Criteria for Pixels |
| GM & WM & CSF Probability (PFUS option) |
| Gradient Vector Flow |
| H |
| Handy Image Processing Tools |
| Histogram |
| Histogram |
| Histogram |
| Histogram Plots |
| Hottest Pixels |
| I |
| Image Association |
| Detailed Pipeline Example: Kinetic Modeling with SRTM, Brain VOIs in PET Space |
| Image Association |
| Pipeline Example: Brain Uptake Statistics, MR Space |
| Replace Images |
| Image Comparison - Page 4 |
| Image Data Formats |
| Image Data Loading |
| Database Loading - Page 1 (Option) |
| Image Data Loading |
| Image Data Loading |
| Image Data Saving |
| Database Saving |
| Image Data Saving |
| Image Data Saving |
| Image Data Transformations during Loading |
| Image Data Transformations during Loading |
| Pipeline Definition User Interface |
| Image Display and Basic Processing |
| Image Display and Basic Processing |
| Image Viewing - Page 2 |
| Image Fusion - Page 5 (Optional) |
| Image History and Macros |
| Database Loading |
| Image History and Macros |
| Macro |
| Macro |
| Image Layout |
| Image Properties |
| Image Viewing - Page 2 |
| Image Zooming |
| ImageJ |
| Implementation of DICOM Servers on a Dedicated Machine |
| Implemented VOI-based PVC Variants |
| Inclusion Criteria for Pixels |
| Inclusion Criteria for Pixels |
| Statistics Measures |
| Incoming Folder |
| Information Selection |
| Initial Operations |
| Inspecting Associations |
| Installation and Configuration |
| Installation Overview |
| Interpolation |
| Iso-contour Interactive Mode |
| Iso-contour Mode (Pseudo-Snake) |
| ITK Image Filters |
| K |
| Keyboard Shortcuts |
| Basic User Interface Elements |
| Keyboard Shortcuts |
| Kinetic Modeling |
| Kinetic Modeling (PKIN Option) |
| Kruskal-Wallis Test |
| L |
| Ladder Plots |
| Linear Mixed Effect Models (LME) |
| Linear Models: Statistical Analysis of Regional Imaging Data |
| Linux Installation |
| List of Pipelines |
| List of Pipelines |
| Pipeline Processing |
| LME PMOD-R Implementation |
| Loading Data from Databases |
| Loading Macros |
| Loading of Vector Data |
| Loading/Saving with Database Option |
| Loading/Saving without Database Option |
| M |
| Mac OS X Installation |
| Macro |
| Macro |
| Macro |
| Management using AlwaysUp Web Service |
| Mapping of Pixels from Scatter Plots |
| Mapping of Pixels from Scatter Plots |
| Segmentation |
| Markers |
| Masking Inside and Outside of VOIs |
| Merge Frames Tool |
| Image Viewing - Page 2 |
| Merge Frames Tool |
| Methodology Description |
| Methodology Description |
| Methodology Description |
| Modality Info |
| Modes of Statistics Calculation |
| MODULES |
| Morphological |
| Motion Correction |
| Motion Correction (PFUS option) |
| Mouse Brain Atlas |
| MR Skull Stripping (PFUS option) |
| Multiple DICOM Server Creation |
| N |
| New Topic |
| Noise Addition |
| Numeric Operations |
| O |
| On Start |
| Operations on a Group of VOIs |
| Outline Object Label Maps |
| Overlapping Control |
| Overview |
| Overview |
| Overview |
| P |
| Package Use |
| Paint ROI by Circle (2D) |
| Partial-Volume Correction (PVC) |
| External Tools |
| Partial-Volume Correction (PVC) |
| PVC (Brain MR based) |
| PVC (VOI based) |
| Patient, Study and SUV-related Information |
| Performing MRI-based PVC |
| PET Tumor Volume Segmentation |
| Pipeline Definition User Interface |
| Pipeline Example: Brain Uptake Statistics, MR Space |
| Pipeline Input Data |
| Pipeline Processing |
| Pipeline-only Tools |
| Pixel Dump |
| Data Loading |
| Pixel Dump |
| Pixel Dump |
| Plotting Layout |
| PMOD Base Functionality Introduction |
| PMOD Basics |
| PMOD configuration |
| PMOD Copyright Notice |
| PMOD Database Functionality |
| General Configuration |
| Pipeline Processing |
| PMOD Database Functionality |
| PMOD DICOM Functionality |
| Creation of a DICOMDIR File |
| General Configuration |
| PMOD DICOM Functionality |
| PMOD Image Viewing and VOI Tool (PVIEW) |
| PMOD Installation |
| PMOD License Server Installation |
| PMOD configuration |
| PMOD License Server Installation |
| PMOD License Server Installation |
| PMOD License Server Installation |
| PMOD Network Clients Installation and Configuration |
| PMOD Network Clients Installation and Configuration |
| PMOD Network Clients Installation and Configuration |
| PMOD Network Clients Installation and Configuration |
| PMOD Network License Installation |
| PMOD Network License Installation |
| PMOD Network License Installation |
| PMOD Network License Installation |
| PMOD Stand-alone License Installation |
| PMOD Server Processes as Windows Services |
| Implementation of DICOM Servers on a Dedicated Machine |
| PMOD Server Processes as Windows Services |
| PMOD Software Extraction |
| PMOD Software Extraction |
| PMOD Software Extraction |
| PMOD Software Extraction |
| PMOD Stand-alone License Installation |
| PMOD License Server Installation |
| PMOD License Server Installation |
| PMOD License Server Installation |
| PMOD Network Clients Installation and Configuration |
| PMOD Network Clients Installation and Configuration |
| PMOD Network Clients Installation and Configuration |
| PMOD Stand-alone License Installation |
| PMOD Stand-alone License Installation |
| PMOD Stand-alone License Installation |
| Preparation of VOI Atlas Files for PMOD |
| Preparations |
| Presentation of Fused Images |
| Image Comparison - Page 4 |
| Presentation of Fused Images |
| Principal Component Analysis |
| Problem Reporting |
| Problem Reporting |
| R Console Organization |
| PVC (Brain MR based) |
| PVC (VOI based) |
| PVC based on Manual and Brain Template VOIs |
| PVC of Brain Images based on MRI Segmentation |
| PVC References |
| PVC using Manual VOIs |
| PVC using Template VOIs based on Individual Masks |
| PVC using Template VOIs based on Plain VOIs |
| PVC using Template VOIs based on Standard Masks |
| PXMOD, PKIN, READ/WRITE, LOADING, Color Tables Plug-ins |
| Q |
| Quality Control (QC) |
| R |
| R Console |
| R Console Organization |
| R Console Organization |
| Statistics Viewer |
| R Installation and Configuration |
| R Installation and Configuration |
| SETTINGS |
| R Statistics in PMOD |
| R Variable Structure |
| Accessing PMOD R Variables |
| Plotting Layout |
| R Variable Structure |
| Recommendations |
| Reduce Matrix |
| Handy Image Processing Tools |
| Reduce Matrix |
| References |
| Registration and Normalization |
| Registration and Normalization (PFUS Option) |
| Regular VOIs |
| Replace Images |
| Replace Images |
| Replace Images |
| Replace Values |
| Handy Image Processing Tools |
| Replace Values |
| Replication from one Database to Another |
| Reports |
| Requirements |
| Resize |
| Reslicing of the Images at Oblique Orientations |
| rm_ANOVA/MANOVA PMOD-R Implementation |
| rm-ANOVA/MANOVA |
| ROI and Contour Level Properties |
| ROI and Contour Level Properties |
| VOI Grouping |
| VOI Level Properties |
| ROI Toolbar |
| Running the Pipeline |
| S |
| Saving Data to Databases |
| Scale Values |
| Handy Image Processing Tools |
| Scale Values |
| Scatter Plots |
| Segmentation |
| Server Starting/Stopping |
| Services Administration |
| Setting up a Transaction Server to Publish a Database |
| Combination of License and Database Server |
| Combination of License and Database Server |
| Combination of License and Database Server |
| Creation and Configuration of Databases |
| Implementation of DICOM Servers on a Dedicated Machine |
| PMOD configuration |
| Setting up a Transaction Server to Publish a Database |
| SETTINGS |
| Data Loading |
| SETTINGS |
| Statistics Measures |
| Showing and Saving Movies |
| 3D Volume Rendering, Rotating MIP Images |
| Showing and Saving Movies |
| Single-Subject AAL Human Brain Atlas |
| Spatial VOI Transformation |
| Special-purpose Sub-VOIs |
| Sphere at Max |
| Sphere with Max Average (Peak VOI) |
| Sprague-Dawley Rat Brain Atlas (Schiffer) |
| Standard Orientation |
| Starting |
| Starting Pipeline Definition |
| Automatic Brain VOIs |
| Starting Pipeline Definition |
| Starting the R Console |
| Statistics |
| Statistics |
| SUV Value Inspection and Statistics |
| Statistics Aggregation |
| Analysis Scripts for Aggregates |
| Data Loading |
| R Console Organization |
| Statistics Aggregation |
| Statistics Measures |
| Inclusion Criteria for Pixels |
| Statistics Measures |
| VOI Statistics |
| Statistics Viewer |
| Data Loading |
| Statistics Viewer |
| SUV Image Calculation |
| Supported Platforms |
| SUV |
| Data Inspector |
| Handy Image Processing Tools |
| SUV Image Calculation |
| SUV Value Inspection and Statistics |
| Changing the Image Presentation |
| DICOM Part 10 Data, C-STORE |
| Patient, Study and SUV-related Information |
| SETTINGS |
| Statistics Viewer |
| SUV Image Calculation |
| SUV Value Inspection and Statistics |
| T |
| Table Layout |
| Testing the Pipeline |
| Test-Retest |
| Time-Activity Curve Generation with Statistics |
| Time-Activity Curve Generation with Transfer to PKIN |
| Tool Configurations |
| Tool Configurations |
| VOI Interface |
| Tree Organization of Brain VOIs |
| Troubleshooting |
| Troubleshooting |
| Troubleshooting |
| Troubleshooting |
| t-Test |
| U |
| Undo/Redo/Neutral |
| Use of External Tools for Pipeline Processing |
| User Creation |
| User Programming and Scripts |
| USERS |
| User-Specific Database Preferences |
| SETTINGS |
| User-Specific Database Preferences |
| Using Contour VOIs |
| Using Label Maps Files |
| Outline Object Label Maps |
| Using Label Maps Files |
| Using Mask Files |
| Using VOI Atlas Files |
| Using Label Maps Files |
| Using Mask Files |
| Using VOI Atlas Files |
| V |
| Validation and Recommendations |
| Variance Analysis |
| Vertex Edit Mode |
| Viewing and Changing Study Information |
| VOI Adjustment Tools |
| VOI Association |
| VOI Atlases included in PMOD |
| VOI Grouping |
| VOI Interface |
| VOI Level Properties |
| VOI Save/Load |
| Spatial VOI Transformation |
| VOI Save/Load |
| VOI Statistics |
| VOI Toolbar |
| VOI-based Image Cropping |
| Volume-of-Interest (VOI) Analysis |
| Volume-of-Interest (VOI) Analysis |
| Volume-of-Interest Analysis - Page 3 |
| Volume-of-Interest Analysis - Page 3 |
| W |
| Wavelet Filtering |
| What happens with received DICOM Images |
| Pipeline Processing |
| What happens with received DICOM Images |
| Windows Installation |
| Windows Server Configuration |
| AlwaysUp Web Service configuration (optional) |
| Windows Server Configuration |
| Wistar Rat Brain Atlas (Tohoku) |